BioDiVinE: A Framework for Parallel Analysis of Biological Models
Computational Engineering, Finance, and Science
2009-10-07 v1 Distributed, Parallel, and Cluster Computing
Quantitative Methods
Abstract
In this paper a novel tool BioDiVinEfor parallel analysis of biological models is presented. The tool allows analysis of biological models specified in terms of a set of chemical reactions. Chemical reactions are transformed into a system of multi-affine differential equations. BioDiVinE employs techniques for finite discrete abstraction of the continuous state space. At that level, parallel analysis algorithms based on model checking are provided. In the paper, the key tool features are described and their application is demonstrated by means of a case study.
Cite
@article{arxiv.0910.0928,
title = {BioDiVinE: A Framework for Parallel Analysis of Biological Models},
author = {Jiří Barnat and Luboš Brim and Ivana Černá and Sven Dražan and Jana Fabriková and Jan Láník and David Šafránek and Hongwu Ma},
journal= {arXiv preprint arXiv:0910.0928},
year = {2009}
}