English

Bayesian non-parametric inference for $\Lambda$-coalescents: consistency and a parametric method

Methodology 2019-08-13 v5 Probability Statistics Theory Populations and Evolution Computation Statistics Theory

Abstract

We investigate Bayesian non-parametric inference of the Λ\Lambda-measure of Λ\Lambda-coalescent processes with recurrent mutation, parametrised by probability measures on the unit interval. We give verifiable criteria on the prior for posterior consistency when observations form a time series, and prove that any non-trivial prior is inconsistent when all observations are contemporaneous. We then show that the likelihood given a data set of size nNn \in \mathbb{N} is constant across Λ\Lambda-measures whose leading n2n - 2 moments agree, and focus on inferring truncated sequences of moments. We provide a large class of functionals which can be extremised using finite computation given a credible region of posterior truncated moment sequences, and a pseudo-marginal Metropolis-Hastings algorithm for sampling the posterior. Finally, we compare the efficiency of the exact and noisy pseudo-marginal algorithms with and without delayed acceptance acceleration using a simulation study.

Keywords

Cite

@article{arxiv.1512.00982,
  title  = {Bayesian non-parametric inference for $\Lambda$-coalescents: consistency and a parametric method},
  author = {Jere Koskela and Paul A. Jenkins and Dario Spanò},
  journal= {arXiv preprint arXiv:1512.00982},
  year   = {2019}
}

Comments

28 pages, 3 figures

R2 v1 2026-06-22T12:00:20.730Z