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Bayesian Additive Regression Trees for functional ANOVA model

Machine Learning 2026-04-01 v4 Machine Learning

Abstract

Bayesian Additive Regression Trees (BART) is a powerful statistical model that leverages the strengths of Bayesian inference and regression trees. It has received significant attention for capturing complex non-linear relationships and interactions among predictors. However, the accuracy of BART often comes at the cost of interpretability. To address this limitation, we propose ANOVA Bayesian Additive Regression Trees (ANOVA-BART), a novel extension of BART based on the functional ANOVA decomposition, which is used to decompose the variability of a function into different interactions, each representing the contribution of a different set of covariates or factors. Our proposed ANOVA-BART enhances interpretability, preserves and extends the theoretical guarantees of BART, and achieves comparable prediction performance. Specifically, we establish that the posterior concentration rate of ANOVA-BART is nearly minimax optimal, and further provides the same convergence rates for each interaction that are not available for BART. Moreover, comprehensive experiments confirm that ANOVA-BART is comparable to BART in both accuracy and uncertainty quantification, while also demonstrating its effectiveness in component selection. These results suggest that ANOVA-BART offers a compelling alternative to BART by balancing predictive accuracy, interpretability, and theoretical consistency.

Keywords

Cite

@article{arxiv.2509.03317,
  title  = {Bayesian Additive Regression Trees for functional ANOVA model},
  author = {Seokhun Park and Insung Kong and Yongdai Kim},
  journal= {arXiv preprint arXiv:2509.03317},
  year   = {2026}
}
R2 v1 2026-07-01T05:19:15.898Z