English

Barker's algorithm for Bayesian inference with intractable likelihoods

Computation 2017-09-25 v1

Abstract

In this expository paper we abstract and describe a simple MCMC scheme for sampling from intractable target densities. The approach has been introduced in Gon\c{c}alves et al. (2017a) in the specific context of jump-diffusions, and is based on the Barker's algorithm paired with a simple Bernoulli factory type scheme, the so called 2-coin algorithm. In many settings it is an alternative to standard Metropolis-Hastings pseudo-marginal method for simulating from intractable target densities. Although Barker's is well-known to be slightly less efficient than Metropolis-Hastings, the key advantage of our approach is that it allows to implement the "marginal Barker's" instead of the extended state space pseudo-marginal Metropolis-Hastings, owing to the special form of the accept/reject probability. We shall illustrate our methodology in the context of Bayesian inference for discretely observed Wright-Fisher family of diffusions.

Keywords

Cite

@article{arxiv.1709.07710,
  title  = {Barker's algorithm for Bayesian inference with intractable likelihoods},
  author = {Flavio B. Gonçalves and Krzysztof Łatuszyński and Gareth O. Roberts},
  journal= {arXiv preprint arXiv:1709.07710},
  year   = {2017}
}

Comments

To appear in the Brazilian Journal of Probability and Statistics

R2 v1 2026-06-22T21:51:47.995Z