Average Sequence dissimilarity under simple multi-species coalescent
Populations and Evolution
2011-04-06 v1
Authors:
Joseph Heled
Abstract
We show how to analytically derive the average sequence dissimilarity (ASD) within and between species under a simplified multi-species coalescent setup.
Cite
@article{arxiv.1104.0727,
title = {Average Sequence dissimilarity under simple multi-species coalescent},
author = {Joseph Heled},
journal= {arXiv preprint arXiv:1104.0727},
year = {2011}
}
Related papers
View all related →
Applications · Statistics
Species Abundance Distribution and Species Accumulation Curve: A General Framework and Results
Cheuk Ting Li, Kim-Hung Li
2022-10-25
Probability · Mathematics
Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
Max Hill, Brandon Legried, Sebastien Roch
2020-07-15
Populations and Evolution · Quantitative Biology
Quartet-Based Inference Methods are Statistically Consistent Under the Unified Duplication-Loss-Coalescence Model
Alexey Markin, Oliver Eulenstein
2020-04-10
Populations and Evolution · Quantitative Biology
Covariance Decomposition for Distance Based Species Tree Estimation
Georgios Aliatimis, Ruriko Yoshida, Burak Boyaci, James A. Grant
2025-07-11
Signal Processing · Electrical Eng. & Systems
Sequence Alignment Algorithm for Statistical Similarity Assessment
Jakub Nikonowicz, Łukasz Matuszewski, Paweł Kubczak
2021-06-09
Populations and Evolution · Quantitative Biology
Species tree inference by the STAR method, and generalizations
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
2012-04-20
Probability · Mathematics
On the number of allelic types for samples taken from exchangeable coalescents with mutation
Fabian Freund, Martin Möhle
2008-08-14
Soft Condensed Matter · Physics
Multi-speckle diffusing wave spectroscopy with a single mode detection scheme
P. Zakharov, F. Cardinaux, F. Scheffold
2009-11-11
Machine Learning · Statistics
Adaptive Sampling for Discovery
Ziping Xu, Eunjae Shim, Ambuj Tewari, Paul Zimmerman
2023-01-04
Populations and Evolution · Quantitative Biology
NJst and ASTRID are not statistically consistent under a random model of missing data
John A. Rhodes, Michael G. Nute, Tandy Warnow
2020-01-23
Probability · Mathematics
A Type D Asymmetric Simple Exclusion Process Generated by an Explicit Central Element of $\mathcal{U}_q(\mathfrak{so}_{10})$
Eddie Rohr, Karthik Sellakumaran Latha, Amanda Yin
2023-07-31
Machine Learning · Computer Science
Collaborative Anomaly Detection
Ke Bai, Aonan Zhang, Zhizhong Li, Ricardo Heano +2
2022-09-22
Computer Vision and Pattern Recognition · Computer Science
Deep semi-supervised approach based on consistency regularization and similarity learning for weeds classification
Farouq Benchallal, Adel Hafiane, Nicolas Ragot, Raphael Canals
2025-10-14
Probability · Mathematics
Quadri-allele frequency spectrum in a coalescent topology for mutations in non-constant population size
Arka Bhattacharya
2014-05-13
Populations and Evolution · Quantitative Biology
Null expectations and null hypothesis testing for the species abundance distribution
Gabriel Arellano
2021-03-08
Computer Vision and Pattern Recognition · Computer Science
CADS: Unleashing the Diversity of Diffusion Models through Condition-Annealed Sampling
Seyedmorteza Sadat, Jakob Buhmann, Derek Bradley, Otmar Hilliges +1
2024-05-14
Statistical Mechanics · Physics
Multi-Species Asymmetric Exclusion Process in Ordered Sequential Update
M. E. Fouladvand, F. Jafarpour
2009-10-31
Astrophysics of Galaxies · Physics
Analyzer of Spectra for Age Determination (ASAD) - Algorithm and Applications
Randa Asa'd
2015-06-22
Populations and Evolution · Quantitative Biology
From gene trees to species trees II: Species tree inference in the deep coalescence model
Louxin Zhang
2010-03-08
Information Retrieval · Computer Science
Attribute-aware Diversification for Sequential Recommendations
Anton Steenvoorden, Emanuele Di Gloria, Wanyu Chen, Pengjie Ren +1
2020-08-04
Combinatorics · Mathematics
The Number of Distinct Subsequences of a Random Binary String
Michael J. Collins
2013-10-29
Audio and Speech Processing · Electrical Eng. & Systems
Local Density-Based Anomaly Score Normalization for Domain Generalization
Kevin Wilkinghoff, Haici Yang, Janek Ebbers, François G. Germain +2
2025-10-29
Populations and Evolution · Quantitative Biology
On the variance of internode distance under the multispecies coalescent
Sebastien Roch
2018-12-21
Statistical Mechanics · Physics
Long-range correlations and ensemble inequivalence in a generalized ABC model
A. Lederhendler, D. Mukamel
2015-05-19
Probability · Mathematics
The coalescent structure of uniform and Poisson samples from multitype branching processes
Samuel G. G. Johnston, Amaury Lambert
2021-06-24