Automated family-based naming of small RNAs for next generation sequencing data using a modified MD5-digest algorithm
Cryptography and Security
2012-10-25 v1 Genomics
Abstract
We developed NameMyGene, a web tool and a stand alone program to easily generate putative family-based names for small RNA sequences so that laboratories can easily organize, analyze, and observe patterns from, the massive amount of data generated by next-generation sequencers. NameMyGene, also applicable to other emerging methods such as RNA-Seq, and Chip-Seq, solely uses the input small RNA sequence and does not require any additional data such as other sequence data sets. The web server and software is freely available (http://www.johnlab.org/NameMyGene) and is based on Java to ensure platform independency.
Cite
@article{arxiv.1210.6385,
title = {Automated family-based naming of small RNAs for next generation sequencing data using a modified MD5-digest algorithm},
author = {Guodong Liu and Zhihua Li and Yuefeng Lin and Bino John},
journal= {arXiv preprint arXiv:1210.6385},
year = {2012}
}
Comments
12 pages, 1 main table, 3 supplementary information tables