English

Asymptotics of a Brownian ratchet for Protein Translocation

Probability 2009-12-07 v2

Abstract

Protein translocation in cells has been modelled by \emph{Brownian ratchets}. In such models, the protein diffuses through a nanopore. On one side of the pore, ratcheting molecules bind to the protein and hinder it to diffuse out of the pore. We study a Brownian ratchet by means of a reflected Brownian motion (Xt)t0(X_t)_{t\geq 0} with a changing reflection point (Rt)t0(R_t)_{t\geq 0}. The rate of change of RtR_t is γ(XtRt)\gamma(X_t-R_t) and the new reflection boundary is distributed uniformly between RtR_{t-} and XtX_t. The asymptotic speed of the ratchet scales with γ1/3\gamma^{1/3} and the asymptotic variance is independent of γ\gamma.

Keywords

Cite

@article{arxiv.0904.2276,
  title  = {Asymptotics of a Brownian ratchet for Protein Translocation},
  author = {Andrej Depperschmidt and Peter Pfaffelhuber},
  journal= {arXiv preprint arXiv:0904.2276},
  year   = {2009}
}

Comments

Replaced with revised version, 27 pages, 3 figures