Anti-clustering in the national SARS-CoV-2 daily infection counts
Abstract
The noise in daily infection counts of an epidemic should be super-Poissonian due to intrinsic epidemiological and administrative clustering. Here, we use this clustering to classify the official national SARS-CoV-2 daily infection counts and check for infection counts that are unusually anti-clustered. We adopt a one-parameter model of infections per cluster, dividing any daily count into 'clusters', for 'country' . We assume that on a given day is drawn from a Poisson distribution whose mean is robustly estimated from the four neighbouring days, and calculate the inferred Poisson probability of the observation. The values should be uniformly distributed. We find the value that minimises the Kolmogorov-Smirnov distance from a uniform distribution. We investigate the distribution, for total infection count . We find that most of the daily infection count sequences are inconsistent with a Poissonian model. Most are found to be consistent with the model. The 28-, 14- and 7-day least noisy sequences for several countries are best modelled as sub-Poissonian, suggesting a distinct epidemiological family. The 28-day least noisy sequence of Algeria has a preferred model that is strongly sub-Poissonian, with . TJ, TR, RU, BY, AL, AE, and NI have preferred models that are also sub-Poissonian, with . A statistically significant () correlation was found between the lack of media freedom in a country, as represented by a high Reporters sans frontieres Press Freedom Index (PFI), and the lack of statistical noise in the country's daily counts. The model appears to be an effective detector of suspiciously low statistical noise in the national SARS-CoV-2 daily infection counts.
Keywords
Cite
@article{arxiv.2007.11779,
title = {Anti-clustering in the national SARS-CoV-2 daily infection counts},
author = {Boudewijn F. Roukema},
journal= {arXiv preprint arXiv:2007.11779},
year = {2021}
}
Comments
30 pages, 17 figures, 12 tables; zenodo.5262698 at https://zenodo.org/record/5262698, live git at https://codeberg.org/boud/subpoisson, archived git at https://archive.softwareheritage.org/swh:1:rev:086b14906401f8484258cead5bc7152439a686ee ; v2: comparison with alternative methods and correlation with PFI, data updated to May 2021; v3: refs added, version accepted in PeerJ