English

Anti-clustering in the national SARS-CoV-2 daily infection counts

Populations and Evolution 2021-08-27 v3 Physics and Society Methodology

Abstract

The noise in daily infection counts of an epidemic should be super-Poissonian due to intrinsic epidemiological and administrative clustering. Here, we use this clustering to classify the official national SARS-CoV-2 daily infection counts and check for infection counts that are unusually anti-clustered. We adopt a one-parameter model of ϕi\phi'_i infections per cluster, dividing any daily count nin_i into ni/ϕin_i/\phi'_i 'clusters', for 'country' ii. We assume that ni/ϕin_i/\phi'_i on a given day jj is drawn from a Poisson distribution whose mean is robustly estimated from the four neighbouring days, and calculate the inferred Poisson probability PijP'_{ij} of the observation. The PijP'_{ij} values should be uniformly distributed. We find the value ϕi\phi_i that minimises the Kolmogorov-Smirnov distance from a uniform distribution. We investigate the (ϕi,Ni)(\phi_i, N_i) distribution, for total infection count NiN_i. We find that most of the daily infection count sequences are inconsistent with a Poissonian model. Most are found to be consistent with the ϕi\phi_i model. The 28-, 14- and 7-day least noisy sequences for several countries are best modelled as sub-Poissonian, suggesting a distinct epidemiological family. The 28-day least noisy sequence of Algeria has a preferred model that is strongly sub-Poissonian, with ϕi28<0.1\phi_i^{28} < 0.1. TJ, TR, RU, BY, AL, AE, and NI have preferred models that are also sub-Poissonian, with ϕi28<0.5\phi_i^{28} < 0.5. A statistically significant (Pτ<0.05P^{\tau} < 0.05) correlation was found between the lack of media freedom in a country, as represented by a high Reporters sans frontieres Press Freedom Index (PFI2020^{2020}), and the lack of statistical noise in the country's daily counts. The ϕi\phi_i model appears to be an effective detector of suspiciously low statistical noise in the national SARS-CoV-2 daily infection counts.

Keywords

Cite

@article{arxiv.2007.11779,
  title  = {Anti-clustering in the national SARS-CoV-2 daily infection counts},
  author = {Boudewijn F. Roukema},
  journal= {arXiv preprint arXiv:2007.11779},
  year   = {2021}
}

Comments

30 pages, 17 figures, 12 tables; zenodo.5262698 at https://zenodo.org/record/5262698, live git at https://codeberg.org/boud/subpoisson, archived git at https://archive.softwareheritage.org/swh:1:rev:086b14906401f8484258cead5bc7152439a686ee ; v2: comparison with alternative methods and correlation with PFI, data updated to May 2021; v3: refs added, version accepted in PeerJ