English

Anomalous diffusion and FRAP dynamics in the random comb model

Statistical Mechanics 2016-08-03 v1

Abstract

We address the problem of diffusion on a comb whose teeth display a varying length. Specifically, the length \ell of each tooth is drawn from a probability distribution displaying the large-\ell behavior P()(1+α)P(\ell) \sim \ell^{-(1+\alpha)} (α>0\alpha>0). Our method is based on the mean-field description provided by the well-tested CTRW approach for the random comb model, and the obtained analytical result for the diffusion coefficient is confirmed by numerical simulations. We subsequently incorporate retardation effects arising from binding/unbinding kinetics into our model and obtain a scaling law characterizing the corresponding change in the diffusion coefficient. Finally, our results for the diffusion coefficient are used as an input to compute concentration recovery curves mimicking FRAP experiments in comb-like geometries such as spiny dendrites. We show that such curves cannot be fitted perfectly by a model based on scaled Brownian motion, i.e., a standard diffusion equation with a time-dependent diffusion coefficient. However, differences between the exact curves and such fits are small, thereby providing justification for the practical use of models relying on scaled Brownian motion as a fitting procedure for recovery curves arising from particle diffusion in comb-like systems.

Keywords

Cite

@article{arxiv.1603.05972,
  title  = {Anomalous diffusion and FRAP dynamics in the random comb model},
  author = {S. B. Yuste and E. Abad and A. Baumgaertner},
  journal= {arXiv preprint arXiv:1603.05972},
  year   = {2016}
}

Comments

35 pages (double-spaced),10 figures

R2 v1 2026-06-22T13:14:12.332Z