English

Adhesion Induced DNA Naturation

Soft Condensed Matter 2009-11-11 v1 Statistical Mechanics

Abstract

DNA adsorption and naturation is modeled via two interacting flexible homopolymers coupled to a solid surface. DNA denatures if the entropy gain for unbinding the two strands overcomes the loss of binding energy. When adsorbed to a surface, the entropy gain is smaller than in the bulk, leading to a stronger binding and, upon neglecting self-avoidance, absence of a denatured phase. Now consider conditions where the binding potentials are too weak for naturation, and the surface potential too weak to adsorb single strands. In a variational approach it is shown that their combined action may lead to a naturated adsorbed phase. Conditions for the absence of naturation and adsorption are derived too. The phase diagram is constructed qualitatively.

Keywords

Cite

@article{arxiv.cond-mat/0512237,
  title  = {Adhesion Induced DNA Naturation},
  author = {A. E. Allahverdyan and Zh. S. Gevorkian and Chin-Kun Hu and Th. M. Nieuwenhuizen},
  journal= {arXiv preprint arXiv:cond-mat/0512237},
  year   = {2009}
}

Comments

4 pages, 1 figure