English

Accuracy versus Predominance: Reassessing the validity of the quasi-steady-state approximation

Chemical Physics 2025-04-16 v2 Dynamical Systems Quantitative Methods

Abstract

The application of the standard quasi-steady-state approximation to the Michaelis--Menten reaction mechanism is a textbook example of biochemical model reduction, derived using singular perturbation theory. However, determining the specific biochemical conditions that dictate the validity of the standard quasi-steady-state approximation remains a challenging endeavor. Emerging research suggests that the accuracy of the standard quasi-steady-state approximation improves as the ratio of the initial enzyme concentration, e0e_0, to the Michaelis constant, KMK_M, decreases. In this work, we examine this ratio and its implications for the accuracy and validity of the standard quasi-steady-state approximation as compared to other quasi-steady-state reductions in its proximity. Using standard tools from the analysis of ordinary differential equations, we show that while e0/KMe_0/K_M provides an indication of the standard quasi-steady-state approximation's asymptotic accuracy, the standard quasi-steady-state approximation's predominance relies on a small ratio of e0e_0 to the Van Slyke-Cullen constant, KK. Here, we define the predominance of a quasi-steady-state reduction when it offers the highest approximation accuracy among other well-known reductions with overlapping validity conditions. We conclude that the magnitude of e0/Ke_0/K offers the most accurate measure of the validity of the standard quasi-steady-state approximation.

Keywords

Cite

@article{arxiv.2501.06406,
  title  = {Accuracy versus Predominance: Reassessing the validity of the quasi-steady-state approximation},
  author = {Kashvi Srivastava and Justin Eilertsen and Victoria Booth and Santiago Schnell},
  journal= {arXiv preprint arXiv:2501.06406},
  year   = {2025}
}

Comments

30 pages, 6 figures