English

A stochastic model for phylogenetic trees

Probability 2013-06-29 v1 Populations and Evolution

Abstract

We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical we get a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical we get a phylogenetic tree consistent with an HIV tree (many types at any given time, none lasting very long).

Keywords

Cite

@article{arxiv.0905.2349,
  title  = {A stochastic model for phylogenetic trees},
  author = {T. M. Liggett and R. B. Schinazi},
  journal= {arXiv preprint arXiv:0905.2349},
  year   = {2013}
}
R2 v1 2026-06-21T13:02:18.458Z