English

A Knowledge-Informed Pretrained Model for Causal Discovery

Machine Learning 2026-03-24 v1

Abstract

Causal discovery has been widely studied, yet many existing methods rely on strong assumptions or fall into two extremes: either depending on costly interventional signals or partial ground truth as strong priors, or adopting purely data driven paradigms with limited guidance, which hinders practical deployment. Motivated by real-world scenarios where only coarse domain knowledge is available, we propose a knowledge-informed pretrained model for causal discovery that integrates weak prior knowledge as a principled middle ground. Our model adopts a dual source encoder-decoder architecture to process observational data in a knowledge-informed way. We design a diverse pretraining dataset and a curriculum learning strategy that smoothly adapts the model to varying prior strengths across mechanisms, graph densities, and variable scales. Extensive experiments on in-distribution, out-of distribution, and real-world datasets demonstrate consistent improvements over existing baselines, with strong robustness and practical applicability.

Keywords

Cite

@article{arxiv.2603.20842,
  title  = {A Knowledge-Informed Pretrained Model for Causal Discovery},
  author = {Wenbo Xu and Yue He and Yunhai Wang and Xingxuan Zhang and Kun Kuang and Yueguo Chen and Peng Cui},
  journal= {arXiv preprint arXiv:2603.20842},
  year   = {2026}
}
R2 v1 2026-07-01T11:31:30.381Z