A central partition of molecular conformational space. II. Embedding 3D structures
Chemical Physics
2016-11-17 v1 Computational Physics
Abstract
A combinatorial model of molecular conformational space that was previously developped (J. Gabarro-Arpa, Comp. Biol. and Chem. 27, (2003) 153-159), had the drawback that structures could not be properly embedded beacause it lacked explicit rotational symmetry. The problem can be circumvented by sorting the elementary 3D components of a molecular system into a finite set of classes that can be separately embedded. This also opens up the possibility of encoding the dynamical states into a graph structure.
Keywords
Cite
@article{arxiv.physics/0404052,
title = {A central partition of molecular conformational space. II. Embedding 3D structures},
author = {Jacques Gabarro-Arpa},
journal= {arXiv preprint arXiv:physics/0404052},
year = {2016}
}