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A Brief Review on Results and Computational Algorithms for Minimizing the Lennard-Jones Potential

Computational Physics 2011-01-04 v1 Data Structures and Algorithms Chemical Physics

Abstract

The Lennard-Jones (LJ) Potential Energy Problem is to construct the most stable form of NN atoms of a molecule with the minimal LJ potential energy. This problem has a simple mathematical form f(x)=4i=1Nj=1,j<iN(1τij61τij3subjecttoxRnf(x) = 4\sum_{i=1}^N \sum_{j=1,j<i}^N (\frac{1}{\tau_{ij}^6} - \frac{1}{\tau_{ij}^3} {subject to} x\in \mathbb{R}^n, where τij=(x3i2x3j2)2+(x3i1x3j1)2+(x3ix3j)2\tau_{ij} = (x_{3i-2} - x_{3j-2})^2 + (x_{3i-1} - x_{3j-1})^2 + (x_{3i} - x_{3j})^2, (x3i2,x3i1,x3i)(x_{3i-2},x_{3i-1},x_{3i}) is the coordinates of atom ii in R3\mathbb{R}^3, i,j=1,2,...,N(2integer)i,j=1,2,...,N(\geq 2 \quad \text{integer}), and n=3Nn=3N; however it is a challenging and difficult problem for many optimization methods when NN is larger. In this paper, a brief review and a bibliography of important computational algorithms on minimizing the LJ potential energy are introduced in Sections 1 and 2. Section 3 of this paper illuminates many beautiful graphs (gotten by the author nearly 10 years ago) for the three dimensional structures of molecules with minimal LJ potential.

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Cite

@article{arxiv.1101.0039,
  title  = {A Brief Review on Results and Computational Algorithms for Minimizing the Lennard-Jones Potential},
  author = {Jiapu Zhang},
  journal= {arXiv preprint arXiv:1101.0039},
  year   = {2011}
}