Quantitative Methods · Quantitative Biology
Cerulean: A hybrid assembly using high throughput short and long reads
Viraj Deshpande, Eric DK Fung, Son Pham, Vineet Bafna
2013-07-31
Genomics · Quantitative Biology
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
Chengxi Ye, Chris Hill, Shigang Wu, Jue Ruan +2
2016-09-06
Genomics · Quantitative Biology
Reducing assembly complexity of microbial genomes with single-molecule sequencing
Sergey Koren, Gregory P Harhay, Timothy PL Smith, James L Bono +5
2013-11-18
Genomics · Quantitative Biology
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +87
2015-02-02
Distributed, Parallel, and Cluster Computing · Computer Science
Extreme-Scale De Novo Genome Assembly
Evangelos Georganas, Steven Hofmeyr, Rob Egan, Aydin Buluc +3
2017-06-01
Genomics · Quantitative Biology
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren +1
2023-06-07
Genomics · Quantitative Biology
Metagenome assembly of high-fidelity long reads with hifiasm-meta
Xiaowen Feng, Haoyu Cheng, Daniel Portik, Heng Li
2021-10-19
Genomics · Quantitative Biology
A step toward a reinforcement learning de novo genome assembler
Kleber Padovani, Roberto Xavier, Rafael Cabral Borges, Andre Carvalho +3
2024-03-11
Quantum Physics · Physics
Pangenome-guided sequence assembly via binary optimisation
Josh Cudby, James Bonfield, Chenxi Zhou, Richard Durbin +1
2026-02-11
Distributed, Parallel, and Cluster Computing · Computer Science
Scalable De Novo Genome Assembly Using Pregel
Da Yan, Hongzhi Chen, James Cheng, Zhenkun Cai +1
2018-01-16
Hardware Architecture · Computer Science
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis
Nika Mansouri Ghiasi, Jisung Park, Harun Mustafa, Jeremie Kim +10
2023-04-07
Genomics · Quantitative Biology
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Can Firtina, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali +3
2020-10-29