The $k$-local Hamiltonian problem is a central model for quantum many-body systems and Hamiltonian complexity. Semidefinite programming and noncommutative sum-of-squares hierarchies provide systematic certificates for ground-state energies, but existing finite-convergence results give no quantitative guarantee on the accuracy of the low hierarchy levels accessible in computation. We prove explicit finite-level convergence rates for these hierarchies in the Pauli setting. For $k$-local Hamiltonians whose Pauli expansion contains only even-weight terms, we show that both the NPA-type lower-bound hierarchy and the upper-bound hierarchy on the spectral minimum have error at most $C(k)\xi^{n,4}_{d+1}/n$, where $\xi^{n,4}_{d+1}$ is the smallest root of a Krawtchouk polynomial and $C(k)$ is independent of the number of qubits $n$ and the hierarchy level $d$. General $k$-local Hamiltonians reduce to this even-weight case by adding one ancilla qubit while preserving the spectrum. The proof constructs almost-reproducing kernels for the Pauli algebra and relates their spectra to Krawtchouk polynomials, giving a noncommutative analogue of recent kernel-based convergence analyses for commutative polynomial optimization. These results provide the first quantitative finite-level accuracy guarantees for noncommutative semidefinite relaxations of Pauli Hamiltonians.